Statistical information of public genome assemblies | ||||||||
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Species | Total assembly | Assembly level | Number of scaffolds | Scaffold N50 | Number of contigs | Contig N50 | Public time | Cite |
Aphelenchoides besseyi | 47.4 Mb | Scaffold | 39 | 17.8 Mb | 112 | 1.1 Mb | 2022/8/1 | Ji, H.; et al. 2023 |
Bursaphelenchus mucronatus (Bmu) | 80.4 Mb | Contig | - | - | 227 | 1.8 Mb | - | - |
Bursaphelenchus mucronatus 2020 | 73 Mb | Chromosome | 72 | 11.5 Mb | 181 | 1.6 Mb | 2022/9/1 | Wu, S.; et al. 2020 |
Bursaphelenchus okinawaensis | 70 Mb | Scaffold | 7 | 11.6 Mb | 11 | 9.8 Mb | 2021/8/1 | Shinya, R.; et al. 2022 |
Bursaphelenchus xylophilus (Bxy) | 77.1 Mb | Scaffold | 11 | 12.6 Mb | 52 | 5.7 Mb | - | - |
Bursaphelenchus xylophilus 2020 | 78.3 Mb | Scaffold | 11 | 12.8 Mb | 54 | 5.9 Mb | 2020/10/1 | Dayi, M.; et al. 2020 |
Ditylenchus destructor | 139.4 Mb | Contig | - | - | 1236 | 782 kb | 2016/3/1 | Zheng, J.; et al. 2016 |
Ditylenchus dipsaci | 227.2 Mb | Scaffold | 1394 | 287.4 kb | 1631 | 246.9 kb | 2019/2/1 | Mimee, B.; et al. 2019 |
Globodera ellingtonae | 105.1 Mb | Scaffold | 2246 | 327.2 kb | 13948 | 13.2 kb | 2016/12/1 | Phillips, W.S.; et al. 2020 |
Globodera pallida | 112.3 Mb | Scaffold | 163 | 2.9 Mb | 1466 | 662.1 kb | 2021/10/1 | van Steenbrugge, J.J.W.; et al. 2022 |
Globodera rostochiensis | 92.2 Mb | Scaffold | 88 | 3.3 Mb | 282 | 1 Mb | 2021/5/1 | van Steenbrugge, J.J.W.; et al. 2021 |
Heterodera glycines | 156.3 Mb | Chromosome | 9 | 17.9 Mb | 2121 | 138.3 kb | 2021/7/1 | Masonbrink, R.; et al. 2021 |
Heterodera schachtii | 174.3 Mb | Scaffold | 395 | 1.3 Mb | 1682 | 301.4 kb | 2022/5/1 | Siddique, S.; et al. 2022 |
Meloidogyne arenaria | 281.7 Mb | Contig | - | - | 1430 | 434.7 kb | 2021/3/1 | - |
Meloidogyne chitwoodi | 47.5 Mb | Contig | - | - | 30 | 30 | 2020/11/1 | Sellers, G.S.; et al. 2021 |
Meloidogyne enterolobii | 240.1 Mb | Scaffold | 4437 | 143.5 kb | 4451 | 143.3 kb | 2020/8/1 | Sellers, G.S.; et al. 2021 |
Meloidogyne exigua | 42.1 Mb | Contig | - | - | 206 | 1.9 Mb | 2021/1/1 | Phan, N.T.; et al. 2021 |
Meloidogyne floridensis | 74.6 Mb | Scaffold | 8887 | 13.3 kb | 13362 | 8.1 kb | 2018/10/1 | Sellers, G.S.; et al. 2021 |
Meloidogyne graminicola | 41.5 Mb | Scaffold | 283 | 294.9 kb | 286 | 294.9 kb | 2020/9/1 | Phan, N.T.; et al. 2020 |
Meloidogyne hapla | 53 Mb | Contig | - | - | 3450 | 37.6 kb | 2008/9/1 | Opperman, C.H.; et al. 2008 |
Meloidogyne incognita | 193.2 Mb | Contig | - | - | 374 | 974.8 kb | 2020/7/1 | Sellers, G.S.; et al. 2021 |
Meloidogyne javanica | 149.9 Mb | Scaffold | 34316 | 14.1 kb | 38690 | 11.9 kb | 2018/10/1 | Blanc-Mathieu, R.; et al. 2017 |
Meloidogyne luci | 209.2 Mb | Contig | - | - | 327 | 1.7 Mb | 2019/12/1 | Susič, N.; et al. 2020 |
Radopholus similis | 50.5 Mb | Scaffold | 5192 | 27.8 kb | 5339 | 26.5 kb | 2020/6/1 | Wram, C.L.; et al. 2019 |
Rotylenchulus reniformis | 310.8 Mb | Scaffold | 100524 | 22.7 kb | 129027 | 6 kb | 2015/6/1 | Showmaker, K.C.; et al. 2019 |